This is an appendix to: A Blast From The Past
About The Table Below
The "Search For 1918 Virus Sections In Sars-Cov-2 genomes" table below is grouped by search results int the "Genome Locations v1918:Sars" column.
The "Row#" column is the number of the row in the SQL database which the genome (one genome per row) came from. The "Sars Bases Size" column is the length of the Sars genome that was searched.
The "GenBank File Id" column data is a unique description (like a social security number, etc.) that is used to identify individual genomes.
The "Sars Size" column is the length of the Sars-Cov-2 genome.
The "Sars Size" column is the length of the Sars-Cov-2 genome.
The "Locations of v1918:Sars" column shows the locations in the genomes of three "finds" during the search. Three 1918 Virus segments in the 1918 Virus genomes are shown, as well as where those three segments are located in the Sars virus genome. The two numbers (the two locations) are separated by a colon (":"). Thus, "350:28702" means that the 1918 virus segment beginning at location 350 was found in the Sars genome at location 28702. Likewise, "480:1789" means that the 1918 virus segment beginning at location 480 was found in the Sars genome at location 1789, and so forth.
The "Sars-CoV Information" column is an inordinate description of the genome. They are not consistent because there is no rigid format in the different countries for describing the context. The country is usually specified or can be discerned by comparison when it is not specified directly.
Row# | GenBank File Id | Sars Size | Locations of v1918:Sars | Sars-CoV Information |
0028 | CNA0013880 | 29911 | 350:28702 480:1973 1020:26881 | Weifang WFCDC0020 2020 China: Weifang |
1615 | MT326151 | 29744 | 350:28518 480:1789 1020:26697 | USA WA UW 1705 2020 USA |
1580 | MT326123.1 | 29744 | 350:28518 480:1789 1020:26697 | USA WA UW 1656 2020 |
1616 | MT326151.1 | 29744 | 350:28518 480:1789 1020:26697 | USA WA UW 1705 2020 |
1579 | MT326123 | 29744 | 350:28518 480:1789 1020:26697 | USA WA UW 1656 2020 USA |
4056 | MT451165 | 29778 | 350:28617 480:1888 1020:26796 | AUS VIC269 2020 Australia |
5760 | MT520208.1 | 29799 | 350:28617 480:1888 1020:26796 | USA MA_MGH_00289 2020 |
4057 | MT451165.1 | 29778 | 350:28617 480:1888 1020:26796 | AUS VIC269 2020 |
0185 | MT079852.1 | 29891 | 350:28710 480:1981 1020:26889 | CHN WHUHnCoV012 2020 |
0184 | MT079852 | 29891 | 350:28710 480:1981 1020:26889 | CHN WHUHnCoV012 2020 China |
0217 | MT123291 | 29927 | 350:28694 480:1965 1020:26873 | IQTC02 2020 CHN China: Guangzhou |
1823 | MT345842 | 29696 | 350:28469 480:1740 1020:26648 | USA WA UW 2250 2020 USA: WA |
1824 | MT345842.1 | 29696 | 350:28469 480:1740 1020:26648 | USA WA UW 2250 2020 |
1570 | MT326117.1 | 29890 | 350:28664 480:1938 1020:26843 | USA WA UW 1688 2020 |
1569 | MT326117 | 29890 | 350:28664 480:1938 1020:26843 | USA WA UW 1688 2020 USA |
0115 | LC528233 | 29902 | 350:28683 480:1954 1020:26862 | Hu DP Kng 19 027 RNA |
5742 | MT520188.1 | 29844 | 350:28647 480:1922 1020:26830 | USA MA_MGH_00184 2020 |
6739 | MT621560.1 | 29873 | 350:28645 480:1946 1020:26824 | HKG HKU_HK 2020 |
8210 | MT644268.1 | 29839 | 350:28644 480:1942 1020:26850 | HKG VM20001061 2020 |
8212 | NMDC60013002-05 | 26973 | 350:25784 480:1685 1020:23959 | isolation BetaCoV Wuhan WH19002 2019 China: Wuhan |