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Appendix usa_co

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This is an appendix to The Coronaviridae -5

Coronaviridae by Country

Definitions:

'GBFF': GenBank flat file
(GenBank-format text file);
'version': the GenBank virus identity;
'virus type' elements:
'CO-':SARS-CoV-1;
'C2-': SARS-CoV-2;
'-AN-': animal virus;
'-HS-':human virus;
'-RN-': RNA genome;
'-PG': partial genome;
'-CG': complete genome;
'meta-host': the host of the
microbe which reproduces the virus;
'collection date': the date
(if known) the virus was collected;
'publish date': the date
the virus info was made known;
'GBFF gene list': the genes
listed in the GBFF;
'gene test count': verified count
(genes in genome);
'avg gene len': average length
of genes in genome
(mutant CoV-2 are in bold).

USA (Cov1, count: 358)
version virus type meta-host collection
date
publish
date
GBFF
gene
list
gene
test
count
avg
gene
len
AY585228.1CO-HS-RN-PGhuman?2004-08-04337483.67
DQ286389.1CO-AN-RN-PGcat?2007-02-14993081.56
AY994055.1CO-AN-RN-PGcat?2008-12-0210102874.4
EU186072.1CO-AN-RN-PGcat?2008-02-20555332.2
NC_006213.1CO-HS-RN-PGhuman?2019-02-21883759.75
AY514485.1CO-AN-RN-PG?? animal?2007-04-06700
GU593319.1CO-AN-RN-PGmice?2010-07-23994871.56
DQ915164.2CO-AN-RN-PGalpaca?2007-06-19661433
NC_002306.3CO-AN-RN-PGcat?2018-08-1310102874.4
KF650371.1CO-AN-RN-PGpig?2013-12-20775680.86
KF650372.1CO-AN-RN-PGpig?2013-12-20775680.86
MN690608.1CO-AN-RN-PGbottlenose dolphin?2020-03-1514142184.86
MN690609.1CO-AN-RN-PGbottlenose dolphin?2020-03-1514142184.86
KF650374.1CO-AN-RN-PGpig?2013-12-20775680.86
KF650375.1CO-AN-RN-PGpig?2013-12-20775680.86
MN690610.1CO-AN-RN-PGbottlenose dolphin?2020-03-1514142184.86
MN690611.1CO-AN-RN-PGbottlenose dolphin?2020-03-1514142184.86
JX169866.1CO-AN-RN-PGmice1947-08-142014-09-2611114015.36
JX169867.1CO-AN-RN-PGmice1947-08-142014-09-2611114042.91
JX504050.1CO-HS-RN-PGhuman2004-01-012013-06-28555260.8
KX900393.1CO-AN-RN-PG?? animal2006-12-082018-10-01993089
JQ410000.1CO-AN-RN-PGalpaca2008-01-012012-04-29661009.5
JX163927.1CO-AN-RN-PG?? animal2010-02-052020-05-2714143074.36
JX163924.1CO-AN-RN-PG?? animal2010-02-052020-05-2714143074.36
JX163925.1CO-AN-RN-PG?? animal2010-02-052020-05-2714143074.36
JX163928.1CO-AN-RN-PG?? animal2010-02-052020-05-2714143074.36
JX163923.1CO-AN-RN-PG?? animal2010-02-102020-05-2714143074.36
JX163926.1CO-AN-RN-PG?? animal2010-02-102020-05-2714143074.36
KC461235.1CO-AN-RN-PGcat2011-01-012013-12-3110102852.8
KC461237.1CO-AN-RN-PGcat2011-01-012013-12-3110102805.4
KC461236.1CO-AN-RN-PGcat2011-01-012013-12-3110102852.8
KM052365.1CO-AN-RN-PGpig2013-05-152014-08-26441598.75
KF650370.1CO-AN-RN-PGpig2013-05-162013-12-20775680.86
KJ778615.1CO-AN-RN-PGwild pig2013-05-202014-06-18226624
KF650373.1CO-AN-RN-PGpig2013-06-062013-12-20775680.86
MH779860.1CO-AN-RN-PG?? animal2014-01-012018-09-24331802
MH779856.1CO-AN-RN-PG?? animal2014-01-012018-09-24331802
KJ481931.1CO-AN-RN-PGpig2014-01-042014-06-05773586
MF618252.1CO-AN-RN-PGmice2014-01-162017-11-0811135
KJ769231.1CO-AN-RN-PGpig2014-03-012015-07-09773586
KJ813439.1CO-HS-RN-PGhuman2014-04-302015-09-29993277.56
KJ829365.1CO-HS-RN-PGhuman2014-05-102014-05-16993277.56
KP223131.1CO-HS-RN-PGhuman2014-12-142014-12-14993277.56
KT381875.1CO-HS-RN-PGhuman2015-01-012016-11-22664496.83
MH779857.1CO-AN-RN-PG?? animal2015-01-012018-09-24331802
KY419113.1CO-AN-RN-PGwild pig2015-07-252017-04-03211274
KY419107.1CO-AN-RN-PGwild pig2015-07-252020-08-21100
KY419112.1CO-AN-RN-PGwild pig2015-08-012020-08-21100
KY419109.1CO-AN-RN-PGwild pig2015-08-012020-08-21100
KY419111.1CO-AN-RN-PGwild pig2015-08-082020-08-21100
KY419110.1CO-AN-RN-PGwild pig2015-08-122020-08-21100
KY419104.1CO-AN-RN-PGwild pig2015-08-152020-08-21100
KY419106.1CO-AN-RN-PGwild pig2015-08-152020-08-21100
KY419105.1CO-AN-RN-PGwild pig2015-08-202020-08-21100
KU521535.1CO-HS-RN-PGhuman2015-09-012016-11-22446406
KY419103.1CO-AN-RN-PGwild pig2015-09-152020-08-21100
MH779858.1CO-AN-RN-PG?? animal2016-01-012018-09-24331802
MH779859.1CO-AN-RN-PG?? animal2016-01-012018-09-24331793
KY406735.1CO-AN-RN-PGpig2016-11-012019-01-01993010
KX179500.1CO-HS-RN-PGhuman2016-12-032016-12-03664496.83
KX900394.1CO-AN-RN-PG?? animal2018-10-012018-10-01993089

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